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Getting Started
Data Acquisition
Image Processing
Simulation
Data Analysis
Crystallography
aloe package
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Index
A
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B
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C
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D
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E
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F
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G
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K
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M
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N
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P
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R
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S
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T
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W
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X
A
aloe (module)
aloe.exp (module)
aloe.exp.affine3D (module)
aloe.exp.calibpc (module)
aloe.exp.ebsdconst (module)
aloe.ext (module)
aloe.ext.ctfFile3 (module)
aloe.ext.transformations (module)
aloe.fit (module)
aloe.image (module)
aloe.image.downsample (module)
aloe.image.filterfft (module)
aloe.image.npa (module)
aloe.io (module)
aloe.io.progress (module)
aloe.jutils (module)
aloe.math (module)
aloe.math.euler (module)
aloe.math.gaussians (module)
aloe.math.trans (module)
aloe.math.trans.transformations (module)
aloe.physics (module)
aloe.physics.reimer (module)
aloe.physics.wave (module)
aloe.plotting (module)
aloe.plotting.make2Dmap (module)
aloe.plotting.pcplotter (module)
aloe.sys (module)
aloe.sys.aloe_logging (module)
B
bragg_angle() (in module aloe.physics.wave)
brkr_to_gnom() (in module aloe.exp.calibpc)
brkr_to_pcxyz() (in module aloe.exp.calibpc)
C
calibratePC() (in module aloe.exp.calibpc)
calibratePC_BRKR() (in module aloe.exp.calibpc)
Ctf (class in aloe.ext.ctfFile3)
ctfFile (module)
D
do_fit_affine3D() (in module aloe.exp.affine3D)
downsample() (in module aloe.image.downsample)
downsample_1d() (in module aloe.image.downsample)
downsample_axis() (in module aloe.image.downsample)
downsample_cube() (in module aloe.image.downsample)
E
euler_tsl2global() (in module aloe.math.euler)
F
filter() (in module aloe.image.filterfft)
fit_affine3D() (in module aloe.exp.affine3D)
G
gaussian() (in module aloe.image.filterfft)
gaussian_fwhm() (in module aloe.math.gaussians)
get_npa() (in module aloe.image.npa)
getAcceleratingVoltage() (aloe.ext.ctfFile3.Ctf method)
getAcquisitionEuler1() (aloe.ext.ctfFile3.Ctf method)
getAcquisitionEuler2() (aloe.ext.ctfFile3.Ctf method)
getAcquisitionEuler3() (aloe.ext.ctfFile3.Ctf method)
getAcquisitionEulers() (aloe.ext.ctfFile3.Ctf method)
getAuthor() (aloe.ext.ctfFile3.Ctf method)
getCoverage() (aloe.ext.ctfFile3.Ctf method)
getDevice() (aloe.ext.ctfFile3.Ctf method)
getHeight() (aloe.ext.ctfFile3.Ctf method)
getJobMode() (aloe.ext.ctfFile3.Ctf method)
getMagnification() (aloe.ext.ctfFile3.Ctf method)
getNumberPhases() (aloe.ext.ctfFile3.Ctf method)
getNumberPixels() (aloe.ext.ctfFile3.Ctf method)
getPhaseLatticeAngleAlpha() (aloe.ext.ctfFile3.Ctf method)
getPhaseLatticeAngleBeta() (aloe.ext.ctfFile3.Ctf method)
getPhaseLatticeAngleGamma() (aloe.ext.ctfFile3.Ctf method)
getPhaseLatticeAngles() (aloe.ext.ctfFile3.Ctf method)
getPhaseLatticeParameterA() (aloe.ext.ctfFile3.Ctf method)
getPhaseLatticeParameterB() (aloe.ext.ctfFile3.Ctf method)
getPhaseLatticeParameterC() (aloe.ext.ctfFile3.Ctf method)
getPhaseLatticeParameters() (aloe.ext.ctfFile3.Ctf method)
getPhaseName() (aloe.ext.ctfFile3.Ctf method)
getPhases() (aloe.ext.ctfFile3.Ctf method)
getPhasesList() (aloe.ext.ctfFile3.Ctf method)
getPhaseSpaceGroupNo() (aloe.ext.ctfFile3.Ctf method)
getPixArray() (aloe.ext.ctfFile3.Ctf method)
getPixelArray() (aloe.ext.ctfFile3.Ctf method)
getPixelCoordinate() (aloe.ext.ctfFile3.Ctf method)
getPixelImageLabel() (aloe.ext.ctfFile3.Ctf method)
getPixelIndex() (aloe.ext.ctfFile3.Ctf method)
getPixelIndexLabel() (aloe.ext.ctfFile3.Ctf method)
getPixelResults_coordinate() (aloe.ext.ctfFile3.Ctf method)
getPixelResults_index() (aloe.ext.ctfFile3.Ctf method)
getProjectFolderName() (aloe.ext.ctfFile3.Ctf method)
getProjectFolderPath() (aloe.ext.ctfFile3.Ctf method)
getProjectImagesFolderName() (aloe.ext.ctfFile3.Ctf method)
getProjectImagesFolderPath() (aloe.ext.ctfFile3.Ctf method)
getProjectName() (aloe.ext.ctfFile3.Ctf method)
getSize() (aloe.ext.ctfFile3.Ctf method)
getTiltAngle() (aloe.ext.ctfFile3.Ctf method)
getTiltAxis() (aloe.ext.ctfFile3.Ctf method)
getWidth() (aloe.ext.ctfFile3.Ctf method)
getXCells() (aloe.ext.ctfFile3.Ctf method)
getXStep() (aloe.ext.ctfFile3.Ctf method)
getYCells() (aloe.ext.ctfFile3.Ctf method)
getYStep() (aloe.ext.ctfFile3.Ctf method)
K
kikuprofile() (in module aloe.physics.reimer)
M
make2Dmap() (in module aloe.plotting.make2Dmap)
make_interpolated_PCdata() (in module aloe.exp.calibpc)
make_map_indices() (in module aloe.exp.calibpc)
make_projective_PCdata() (in module aloe.exp.calibpc)
makeLabelList2D() (in module aloe.plotting.pcplotter)
N
normrange() (in module aloe.exp.calibpc)
P
PCPlotter (class in aloe.plotting.pcplotter)
PCstats() (in module aloe.exp.calibpc)
pcxyz_to_brkr() (in module aloe.exp.calibpc)
pcxyz_to_gnom() (in module aloe.exp.calibpc)
plot() (aloe.plotting.pcplotter.PCPlotter method)
plotPC() (in module aloe.exp.calibpc)
print_progress_line() (in module aloe.io.progress)
project_points() (in module aloe.exp.calibpc)
R
rand_rotation_matrix() (in module aloe.math.euler)
reimer2bf() (in module aloe.physics.reimer)
Rx() (in module aloe.math.euler)
Ry() (in module aloe.math.euler)
Rz() (in module aloe.math.euler)
Rz2D() (in module aloe.math.euler)
S
sem_fit_affine3D() (in module aloe.exp.affine3D)
show_source() (in module aloe.jutils)
T
test() (in module aloe.image.filterfft)
transform_affine() (in module aloe.exp.affine3D)
W
wavelength_e() (in module aloe.physics.wave)
X
XWavel() (in module aloe.physics.wave)